Let's see if I might be able to help...
About the joints of plastic, my first question back at you, which plastic glue do you use, most of theses glues melt the plastic to form the joint, but the plastic although it has bonded does not harden until about 12-24 hours later..
Most of my joints on a corner have slight overhang on one side.. once the glue/plastic has sett, I file this back to the non producing side, with micro fine files, no sanding.. no filling..
As for the side of the Hull, I prefer to use a sanding disc/tool a round drum of sanding paper.. also normally found in a basic dremmel starter box..
As for the freeing ports.. I have numerous types of files, square, flat, half round, and round, in various grades..
A hole is drilled, or a multiple of holes, then opened out with the files..
Maybe this might help you..